pseudodynamics.functions.eval_funs.density_shortterm_simulation¶

pseudodynamics.functions.eval_funs.density_shortterm_simulation(pde_model, DataSet, timepoint_idx=None, time_span=1, timepoints=None, cellstate=None, return_all=False)[source]¶

simulate density for each cells for any two consecutive timepoints

Args:¶

pde_model : nn.Module, sub-class of pdp.models.pde_params_base DataSet : sub-class of pdp.readers.HighdimAnnDS timepoint_idx : list of index , default the full timepoints defined in DataSet time_span : int , how many step of the timepoint index return_all : bool, if return the other output

Return:¶

:: u_int_all : np.ndarry [n_timepoints, n_cells]